FLOSS Bioinformatics Plugins
Geneious | CLC Genomics Workbench

Free/Libre/Open-Source Software for Microbial Research and Analysis.

Developed as part of project-based courses and volunteer work at the Boucher Lab (in the Department of Biological Sciences, University of Alberta).

SeqPartitioner

SeqPartitioner is a plugin that produces multi locus sequence typing (MLST) allelic profiles from nucleotide gene alignments.

Links

Overview

The plugin operates on a collection of gene alignments to produce various tables expressing the grouping of equivalent aligned nucleotide sequences and the number of differences between strains in terms of non-equivalent alleles.